{"id":51,"date":"2018-09-05T14:13:44","date_gmt":"2018-09-05T05:13:44","guid":{"rendered":"http:\/\/info.brc.riken.jp\/ja\/?page_id=37"},"modified":"2024-10-22T14:52:02","modified_gmt":"2024-10-22T05:52:02","slug":"collaboration","status":"publish","type":"page","link":"http:\/\/info.brc.riken.jp\/en\/about\/collaboration","title":{"rendered":"Collaborations"},"content":{"rendered":"
\n

Education<\/h2>\n
\n
\n

<\/p>\n

Master’s\/Doctoral Program in Life Science Innovation, University of Tsukuba<\/dt>\n
Research field:Bioinformatics and Data integration (Hiroshi Masuya: Professor, School of Integrative and Global Majors, University of Tsukuba)
\n https:\/\/tlsi.tsukuba.ac.jp\/en\/people\/faculty-members\/<\/a><\/dd>\n

<\/p>\n<\/dl>\n<\/div>\n

Current external funds<\/h2>\n
\n
\n <\/p>\n
Scientific Research B, Grant-in-Aid for Scientific Research (KAKENHI)<\/dt>\n
Development of environmental DNA metabarcoding robust against detection errors
\n https:\/\/kaken.nii.ac.jp\/en\/grant\/KAKENHI-PROJECT-23H02240\/<\/a><\/dd>\n

<\/p>\n

<\/p>\n

RIKEN Open Life Science Platform<\/dt>\n
Our aim is to achieve an analysis platform for the open bigdata that enables to predict states of cells and organisms in the data-driven way with the collection and integration of multi-layer and multi-modal data in life science.
\n https:\/\/olsp.riken.jp\/en\/<\/a><\/dd>\n

<\/p>\n

<\/p>\n

Other funds (in Japanese only)<\/dt>\n
\n https:\/\/info.brc.riken.jp\/ja\/about\/collaboration<\/a><\/dd>\n

<\/p>\n<\/dl>\n<\/div>\n

Collaborations<\/h2>\n
\n
\n <\/p>\n
INtegrated TRAnscriptional REgulation Data platform (INTRARED)<\/dt>\n
https:\/\/www.intrared.org<\/a><\/dd>\n

<\/p>\n

<\/p>\n

Mammalian Phenotype Ontology (MP) Japanese Translation Project (in DBCLS)<\/dt>\n
https:\/\/github.com\/dbcls\/MP_Japanse\/tree\/main <\/a><\/dd>\n

<\/p>\n

<\/p>\n

Internatioal Mouse Phenotyping Consortium (IMPC)<\/dt>\n
http:\/\/www.mousephenotype.org<\/a><\/dd>\n

<\/p>\n

<\/p>\n

RIKEN MetaDatabase<\/dt>\n
http:\/\/metadb.riken.jp<\/a><\/dd>\n

<\/p>\n

<\/p>\n

National Bioscience Database Center (NBDC)<\/dt>\n
https:\/\/biosciencedbc.jp\/en\/<\/a><\/dd>\n

<\/p>\n

<\/p>\n

Asian Mouse Mutagenesis Resource Association (AMMRA)<\/dt>\n
http:\/\/ammra.info\/<\/a><\/dd>\n

<\/p>\n

<\/p>\n

SPARQLthon (Japanese Only)<\/dt>\n
http:\/\/wiki.lifesciencedb.jp\/mw\/SPARQLthon<\/a><\/dd>\n

<\/p>\n

<\/p>\n

SPARQL Builder Project \/ LOD Surfer Project<\/dt>\n
http:\/\/www.sparqlbuilder.org<\/a>,
\n https:\/\/github.com\/dbcls\/bh17\/wiki\/LOD-Surfer<\/a><\/dd>\n

<\/p>\n

<\/p>\n

Hozo – Ontology Editor<\/dt>\n
http:\/\/www.hozo.jp<\/a><\/dd>\n

\n <\/dl>\n<\/div>\n

External funds (completed)<\/h2>\n
\n
\n <\/p>\n
MOONSHOT Research & Development Program<\/dt>\n
Creation of the industry that enables sustainable global food supply by exploiting unused biological resources
\nBuilding a platform for sustainable farming by environmental control based on the microbe atlas of the soil
\n https:\/\/www.naro.go.jp\/laboratory\/brain\/moon_shot\/202011_nikkei_chibaPD_en.pdf<\/a><\/dd>\n

<\/p>\n

<\/p>\n

ROIS-DS-JOINT (2022)<\/dt>\n
Improvement of genome assembly data and genome annotation for disease model mouse strains (Toyoyuki Takada)<\/dd>\n

<\/p>\n

<\/p>\n

ROIS-DS-JOINT (2020-2022)<\/dt>\n
Advancement and utilization of an information infrastructure to promote genomic medicine for rare and intractable diseases (Tatsuya Kushida)<\/dd>\n

<\/p>\n

<\/p>\n

Scientific Research C, Grant-in-Aid for Scientific Research (KAKENHI)(2020-2022)<\/dt>\n
Development of energy landscape based methods to detect early warnings of large compositional shifts in ecological communities (Kenta Suzuki)
\n https:\/\/kaken.nii.ac.jp\/en\/grant\/KAKENHI-PROJECT-20K06820\/<\/a><\/dd>\n

<\/p>\n

<\/p>\n

Scientific Research B, Grant-in-Aid for Scientific Research (KAKENHI)(2020-2022)<\/dt>\n
Evaluation and prediction of the resilience of biological communities under global environmental change
\n https:\/\/kaken.nii.ac.jp\/en\/grant\/KAKENHI-PROJECT-20H03010\/<\/a><\/dd>\n

<\/p>\n

<\/p>\n

Exploratory, Grant-in-Aid for Challenging Research (KAKENHI)(2020-2021)<\/dt>\n
Development of high-speed emission for aging factors detecting molecular events in vivo.
\n https:\/\/kaken.nii.ac.jp\/en\/grant\/KAKENHI-PROJECT-20K21851\/<\/a><\/dd>\n

<\/p>\n

<\/p>\n

NBRP Genome Information Upgrading Program(2020)<\/dt>\n
Long-read sequencing of disease model mouse strains established in Japan (Toyoyuki Takada)<\/dd>\n

<\/p>\n

<\/p>\n

Scientific Research B, Grant-in-Aid for Scientific Research (KAKENHI)\u201cMolecular phylogeny and evoltuionary hisory of the commensal rodents from Myanmar\u201d(2019-2020)<\/dt>\n
https:\/\/kaken.nii.ac.jp\/en\/grant\/KAKENHI-PROJECT-17H04604\/<\/a><\/dd>\n

<\/p>\n

<\/p>\n

Program for an Integrated Database of Clinical and Genomic Information, Japan Agency for Medical Research and Development\u201cPathogenicVariantDatabaseDirectlyApplicabletoClinicalService\u201d (Co-researcher)(2016-2020)<\/dt>\n
https:\/\/www.amed.go.jp\/en\/program\/list\/04\/01\/006.html<\/dd>\n

<\/p>\n

<\/p>\n

Brain and Individuality, Scientific Research on innovative Areas (FY2016-2020)<\/dt>\n
Project of Planned Research: \u201cDevelopment of a Phenotype Recording and Mining System for Discovering Individuality\u201d (Co-Project leader)
\n http:\/\/www.koseisouhatsu.jp\/en\/<\/a><\/dd>\n

<\/p>\n

<\/p>\n

Scientific Research B, Grant-in-Aid for Scientific Research (KAKENHI)\u201cDevelopment of reasoning technology for aging studies\u201d(2018-2020)<\/dt>\n
https:\/\/kaken.nii.ac.jp\/en\/grant\/KAKENHI-PROJECT-18H03298\/<\/a><\/dd>\n

<\/p>\n

<\/p>\n

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)(2018)<\/dt>\n
Project Area: Spectrum of the Sex: a continuity of phenotypes between female and male
\nResearch Project: Roles of Y chromosome genes on the sex spectrum of body balance (Collaborative research)
\n http:\/\/park.itc.u-tokyo.ac.jp\/sexspectrum\/koubo-project2.html<\/a><\/dd>\n

<\/p>\n

<\/p>\n

Grant-in-Aid for Challenging Exploratory Research, Grant-in-Aid for Scientific Research (KAKENHI)(2016-2018)<\/dt>\n
https:\/\/kaken.nii.ac.jp\/en\/grant\/KAKENHI-PROJECT-16K14600\/<\/a><\/dd>\n

<\/p>\n

<\/p>\n

Innovative Food & Healthcare MASTER(2018)<\/dt>\n
https:\/\/www.fmi.hokudai.ac.jp\/coi_en\/<\/a><\/dd>\n

<\/p>\n<\/dl>\n<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"

Education Master’s\/Doctoral Program in Life Science Innovation, University of Tsukuba Research field:Bioinformatics and Data integration (Hiroshi Masuya: Professor, School of Integrative and Global Majors, University of Tsukuba) https:\/\/tlsi.tsukuba.ac.jp\/en\/people\/faculty-members\/ Current external funds Scientific Research B, Grant-in-Aid for Scientific Research (KAKENHI) Development of environmental DNA metabarcoding robust against detection errors https:\/\/kaken.nii.ac.jp\/en\/grant\/KAKENHI-PROJECT-23H02240\/ RIKEN Open Life Science Platform Our aim is to achieve an analysis platform for the open bigdata that enables to predict states of cells and organisms in the data-driven way with the collection and integration of multi-layer and multi-modal data in life science. https:\/\/olsp.riken.jp\/en\/ Other funds (in Japanese only) https:\/\/info.brc.riken.jp\/ja\/about\/collaboration Collaborations INtegrated TRAnscriptional REgulation Data platform (INTRARED) https:\/\/www.intrared.org Mammalian Phenotype Ontology (MP) Japanese Translation Project (in DBCLS) https:\/\/github.com\/dbcls\/MP_Japanse\/tree\/main Internatioal Mouse Phenotyping Consortium (IMPC) http:\/\/www.mousephenotype.org RIKEN MetaDatabase http:\/\/metadb.riken.jp National Bioscience Database Center (NBDC) https:\/\/biosciencedbc.jp\/en\/ Asian Mouse Mutagenesis Resource Association (AMMRA) http:\/\/ammra.info\/ SPARQLthon (Japanese Only) http:\/\/wiki.lifesciencedb.jp\/mw\/SPARQLthon SPARQL Builder Project \/ LOD Surfer Project http:\/\/www.sparqlbuilder.org, https:\/\/github.com\/dbcls\/bh17\/wiki\/LOD-Surfer Hozo – Ontology Editor http:\/\/www.hozo.jp External funds (completed) MOONSHOT Research & Development Program Creation of the industry that enables sustainable global food supply by exploiting unused biological resources Building a platform for sustainable farming by environmental control based on the microbe atlas of the soil https:\/\/www.naro.go.jp\/laboratory\/brain\/moon_shot\/202011_nikkei_chibaPD_en.pdf ROIS-DS-JOINT (2022) […]<\/p>\n","protected":false},"author":7,"featured_media":0,"parent":49,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_seopress_titles_title":"","_seopress_titles_desc":"","_seopress_robots_index":"","_seopress_robots_follow":"","_seopress_robots_imageindex":"","_seopress_robots_snippet":"","_seopress_robots_primary_cat":"","_seopress_robots_breadcrumbs":"","_seopress_robots_freeze_modified_date":"","_seopress_robots_custom_modified_date":"","_seopress_robots_canonical":"","_seopress_social_fb_title":"","_seopress_social_fb_desc":"","_seopress_social_fb_img":"","_seopress_social_fb_img_attachment_id":0,"_seopress_social_fb_img_width":0,"_seopress_social_fb_img_height":0,"_seopress_social_twitter_title":"","_seopress_social_twitter_desc":"","_seopress_social_twitter_img":"","_seopress_social_twitter_img_attachment_id":0,"_seopress_social_twitter_img_width":0,"_seopress_social_twitter_img_height":0,"_seopress_redirections_value":"","_seopress_redirections_enabled":"","_seopress_redirections_enabled_regex":"","_seopress_redirections_logged_status":"both","_seopress_redirections_param":"","_seopress_redirections_type":301,"_seopress_analysis_target_kw":"","footnotes":"","_wp_rev_ctl_limit":""},"class_list":["post-51","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/info.brc.riken.jp\/en\/wp-json\/wp\/v2\/pages\/51","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/info.brc.riken.jp\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/info.brc.riken.jp\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/info.brc.riken.jp\/en\/wp-json\/wp\/v2\/users\/7"}],"replies":[{"embeddable":true,"href":"http:\/\/info.brc.riken.jp\/en\/wp-json\/wp\/v2\/comments?post=51"}],"version-history":[{"count":20,"href":"http:\/\/info.brc.riken.jp\/en\/wp-json\/wp\/v2\/pages\/51\/revisions"}],"predecessor-version":[{"id":786,"href":"http:\/\/info.brc.riken.jp\/en\/wp-json\/wp\/v2\/pages\/51\/revisions\/786"}],"up":[{"embeddable":true,"href":"http:\/\/info.brc.riken.jp\/en\/wp-json\/wp\/v2\/pages\/49"}],"wp:attachment":[{"href":"http:\/\/info.brc.riken.jp\/en\/wp-json\/wp\/v2\/media?parent=51"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}