{"id":55,"date":"2018-09-06T11:12:45","date_gmt":"2018-09-06T02:12:45","guid":{"rendered":"http:\/\/info.brc.riken.jp\/ja\/?page_id=45"},"modified":"2020-04-27T13:27:08","modified_gmt":"2020-04-27T04:27:08","slug":"technical_info","status":"publish","type":"page","link":"http:\/\/info.brc.riken.jp\/en\/technical_info","title":{"rendered":"Technical information"},"content":{"rendered":"
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Information services provided by the Division<\/h2>\n
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Cross search of bioresouces in BRC<\/dt>\n
We work on the integration of catalog data across mouse, plant, cell, genes and microbe resources and cross-search system across these resources using Resource Description Framework (RDF)<\/a> related technologies. To operate this system, we developed data conversion pipeline to generate RDF-version of latest bioresource catalog data produced in Divisions in BRC.
\nWe implemented data search function that user can input synonym of gene symbols or orthologous gene symbols to normalize difference of written forms of gene names on BRC Website.<\/p>\n

RIKEN BRC Website<\/a><\/p>\n

Mouse Strain Search<\/a> (Experimental Animal Division’s page)<\/p>\n<\/dd>\n

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Linked Open Data of bioresouces<\/dt>\n
We work on the integration of bioresource data from BRC with other biological data using Resource Description Framework (RDF)<\/a>. At the BioResource MetaDatabase<\/a>, you can download, search with SPARQL and browse RDF data set of bioresources in BRC.<\/p>\n

BioResource MetaDatabase<\/a><\/p>\n<\/dd>\n

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Mail News of bioresouces<\/dt>\n
We deliver Mail News of each resources. Registration of subscription are available from links below.\n

Mail News<\/a> at RIKEN BRC Website<\/p>\n<\/dd>\n

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Mouse genomic variation database \u201d MoG+<\/sup> \u201c<\/dt>\n
\u300cMoG+<\/sup> (pronounce, m\u03acg pl\u02c8\u028cs) is a mouse genome database provides visualized mouse genomic variation between multiple laboratory strains including Japanese wild mice derived strains. In this system, you can also search for disease-related information based on common genes of the mouse strains and humans. (This database is renewed version of mouse genome database \u201cNIG_MoG\u201d and \u201cNIG_MoG2\u201d transferred from National Institute of Genetics in Japan.<\/p>\n

MoG+<\/sup><\/a><\/p>\n<\/dd>\n

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Online information service on mouse phenotype-phenotype relationships<\/dt>\n
We provide two application tools, each of which visualizes statistical relationships between mouse phenotypes by purpose, to promote leverage of the comprehensive phenotype data from the Internationa Mouse Phenotyping Consortium (IMPC)<\/a>.
\nVisualization of association rules and putative pathways across the mouse phenome<\/p>\n

https:\/\/brc-riken.shinyapps.io\/phenotypic_associations_across_the_mouse_phenome\/<\/a><\/p>\n

https:\/\/brc-riken.shinyapps.io\/associations_between_biological_systems\/<\/a><\/p>\n<\/dd>\n

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Links to data integration technologies we use<\/h2>\n