“Interview with staff working in 12 laboratories” Interview series No.6
Working to Disseminate Bioresource Information with End-Users in Mind(Daiki Usuda, Technical Staff II)
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Oral presentations in the Genetics Society of Japan 96th Annual Meeting
The Genetics Society of Japan 96th Annual Meeting
Date: 14:15-16:00, September 5, 2024
Venue:E(A213)Workshops
[WS10]:The current situation of a drastic decrease in the number of students taking biology as an elective, and suggestions for reversing this trend
Presenter: Hiroshi Masuya, PhD(Director)
Title: Recent topics in biology terminology: selection of high school textbook terms, etc.Date: 9:45-10:00, September 6, 2024
Venue:E(A213)Oral sessions
OS10:Medical genetics, Animal disease model
Presenter: Toyoyuki Takada, PhD (Research scientist)
Title: Distribution of Structural Variants Revealed by Long-Read Genome Sequencing in Mice
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The research paper authored by Dr. Yuki Yamagata was published online in Genomics & Informatics on June 17, 2024.
Dr. Yuki Yamagata’s paper on using large language models for annotating biomedical figures in articles about cellular senescence has been published online in Genomics & Informatics.
Survey on large language model annotation of cellular senescence from figures in review articles
https://doi.org/10.1186/s44342-024-00011-6
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The research paper co-authored by Drs. Takada, Yoshiki and Shiroishi was published on June 2, 2024.
The collaborative international research paper co-authored by Drs. Takada, Yoshiki (Director of the Experimental Animal Division) and Shiroishi (BRC Director) was published in ZooKeys.
Title: Type specimens, taxonomic history, and genetic analysis of the Japanese dancing mouse or waltzer, Mus wagneri variety rotans Droogleever Fortuyn, 1912 (Mammalia, Muridae)
https://doi.org/10.3897/zookeys.1200.118823
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The research paper authored by Dr. Yuki Yamagata was published online on May 22, 2024.
Dr. Yuki Yamagata’s research paper on developing a new ontology for COVID-19 infection processes has been published online in BMC Medical Informatics and Decision Making.
Homeostasis imbalance process ontology: a study on COVID-19 infectious processes
https://doi.org/10.1186/s12911-024-02516-0
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The research paper authored by Dr. Yuki Yamagata was published online on May 10, 2024.
Dr. Yuki Yamagata’s research paper on the ontological model that organizes knowledge of cellular senescence has been published online in Scientific Data.
Prototyping an Ontological Framework for Cellular Senescence Mechanisms: A Homeostasis Imbalance Perspective
https://doi.org/10.1038/s41597-024-03331-yFor a concise overview of this research paper, please watch our YouTube video.
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Research paper co-authored by Drs. Takada and Shiroishi was published on April 18, 2024.
Research paper co-authored by Drs. Takada and Shiroishi was published in Genome Research.
Title: Inference of selective forces on house mouse genomes during secondary contact in East Asia
https://doi.org/10.1101/gr.278828.123>
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Oral/Poster Presentations in the 71th Annual Meeting of Japanese Association for Laboratory Animal Science.
Our staff members will have oral/poster presentations in the 71th Annual Meeting of Japanese Association for Laboratory Animal Science on May 29-31, 2024.
Title: Exploring human disease-related genomic variants in mouse strains (oral)
Authors: Toyoyuki Takada, Nobutaka Mitsuhashi, Yuki Moriya, Hirokazu Chiba, Takeya Kasukawa, Hiroshi MasuyaDate: May 24,2023 05:00 PM – 06:00 PM
Title: Introduction of New Feature in RIKEN BRC BioResource Search: “Advanced Search” (poster)
Authors: Daiki Usuda, Tatsuya Kushida, Hiroshi Masuya
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Drs. Yamagata and Kushida will give a presentation in the 38th Annual Conference of the Japanese Society for Artificial Intelligence.
Our staff members will have oral/poster presentations in the 38th Annual Conference of the Japanese Society for Artificial Intelligence from May 28 to 31.
https://www.ai-gakkai.or.jp/jsai2024/enDate: May 30, 2024 10:20 AM – 10:40 AM
Title: LLM-based Biomedical Article Figure Annotation for Ontology Development
Authors: Yuki Yamagata, Ryota Yamada, Shuichi Onami, Hiroshi Masuya
https://confit.atlas.jp/guide/event/jsai2024/subject/3P1-GS-3-05/advancedDate: May 31, 2024 10:20 AM – 10:40 AM
Title: Estimation of Disease Model Organisms Based on Phenotypic Data Similarity
Authors: Tatsuya Kushida, Jae-Moon Shin, Daiki Usuda, Yuki Yamagata, Toyoyuki Takada, Norio Kobayashi, Toyofumi Fujisawa, Hiroshi Masuya
https://confit.atlas.jp/guide/event/jsai2024/subject/4F1-GS-3-05/advanced
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Dr. Suzuki has been honored with the 28th Miyadi Award of the Ecological Society of Japan.
We are pleased to announce that Dr. Suzuki has received the 28th Miyadi Award from the Ecological Society of Japan (ESJ).
He gave a commemorative lecture in the 71st ESJ annual meeting.Date: 15:00 March 18, 2024
Awardee: Kenta Suzuki
Lecture title: Ecosystems, Dynamical Systems, and Complex Systems: Toward an Ecology of Predictive ControlAbstract (in Japanese)
https://esj.ne.jp/meeting/abst/71/prize_winners_miyadi_03.html