Collaborations

Education

Master’s/Doctoral Program in Life Science Innovation, University of Tsukuba
Research field:Bioinformatics and Data integration (Hiroshi Masuya: Professor, School of Integrative and Global Majors, University of Tsukuba)
https://tlsi.tsukuba.ac.jp/en/people/faculty-members/

Current external funds

Scientific Research B, Grant-in-Aid for Scientific Research (KAKENHI)
Development of environmental DNA metabarcoding robust against detection errors
https://kaken.nii.ac.jp/en/grant/KAKENHI-PROJECT-23H02240/

RIKEN Open Life Science Platform
Our aim is to achieve an analysis platform for the open bigdata that enables to predict states of cells and organisms in the data-driven way with the collection and integration of multi-layer and multi-modal data in life science.
https://olsp.riken.jp/en/

Other funds (in Japanese only)
https://info.brc.riken.jp/ja/about/collaboration

Collaborations

Mammalian Phenotype Ontology (MP) Japanese Translation Project (in DBCLS)
https://github.com/dbcls/MP_Japanse/tree/main

Internatioal Mouse Phenotyping Consortium (IMPC)
http://www.mousephenotype.org

RIKEN MetaDatabase
http://metadb.riken.jp

National Bioscience Database Center (NBDC)
https://biosciencedbc.jp/en/

Asian Mouse Mutagenesis Resource Association (AMMRA)
http://ammra.info/

SPARQLthon (Japanese Only)
http://wiki.lifesciencedb.jp/mw/SPARQLthon

SPARQL Builder Project / LOD Surfer Project
http://www.sparqlbuilder.org,
https://github.com/dbcls/bh17/wiki/LOD-Surfer

Hozo – Ontology Editor
http://www.hozo.jp

External funds (completed)

MOONSHOT Research & Development Program
Creation of the industry that enables sustainable global food supply by exploiting unused biological resources
Building a platform for sustainable farming by environmental control based on the microbe atlas of the soil
https://www.naro.go.jp/laboratory/brain/moon_shot/202011_nikkei_chibaPD_en.pdf

ROIS-DS-JOINT (2022)
Improvement of genome assembly data and genome annotation for disease model mouse strains (Toyoyuki Takada)

ROIS-DS-JOINT (2020-2022)
Advancement and utilization of an information infrastructure to promote genomic medicine for rare and intractable diseases (Tatsuya Kushida)

Scientific Research C, Grant-in-Aid for Scientific Research (KAKENHI)(2020-2022)
Development of energy landscape based methods to detect early warnings of large compositional shifts in ecological communities (Kenta Suzuki)
https://kaken.nii.ac.jp/en/grant/KAKENHI-PROJECT-20K06820/

Scientific Research B, Grant-in-Aid for Scientific Research (KAKENHI)(2020-2022)
Evaluation and prediction of the resilience of biological communities under global environmental change
https://kaken.nii.ac.jp/en/grant/KAKENHI-PROJECT-20H03010/

Exploratory, Grant-in-Aid for Challenging Research (KAKENHI)(2020-2021)
Development of high-speed emission for aging factors detecting molecular events in vivo.
https://kaken.nii.ac.jp/en/grant/KAKENHI-PROJECT-20K21851/

NBRP Genome Information Upgrading Program(2020)
Long-read sequencing of disease model mouse strains established in Japan (Toyoyuki Takada)

Scientific Research B, Grant-in-Aid for Scientific Research (KAKENHI)“Molecular phylogeny and evoltuionary hisory of the commensal rodents from Myanmar”(2019-2020)
https://kaken.nii.ac.jp/en/grant/KAKENHI-PROJECT-17H04604/

Program for an Integrated Database of Clinical and Genomic Information, Japan Agency for Medical Research and Development“PathogenicVariantDatabaseDirectlyApplicabletoClinicalService” (Co-researcher)(2016-2020)
https://www.amed.go.jp/en/program/list/04/01/006.html

Brain and Individuality, Scientific Research on innovative Areas (FY2016-2020)
Project of Planned Research: “Development of a Phenotype Recording and Mining System for Discovering Individuality” (Co-Project leader)
http://www.koseisouhatsu.jp/en/

Scientific Research B, Grant-in-Aid for Scientific Research (KAKENHI)“Development of reasoning technology for aging studies”(2018-2020)
https://kaken.nii.ac.jp/en/grant/KAKENHI-PROJECT-18H03298/

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)(2018)
Project Area: Spectrum of the Sex: a continuity of phenotypes between female and male
Research Project: Roles of Y chromosome genes on the sex spectrum of body balance (Collaborative research)
http://park.itc.u-tokyo.ac.jp/sexspectrum/koubo-project2.html

Grant-in-Aid for Challenging Exploratory Research, Grant-in-Aid for Scientific Research (KAKENHI)(2016-2018)
https://kaken.nii.ac.jp/en/grant/KAKENHI-PROJECT-16K14600/

Innovative Food & Healthcare MASTER(2018)
https://www.fmi.hokudai.ac.jp/coi_en/



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