Collaborations

Education

Master’s/Doctoral Program in Life Science Innovation, University of Tsukuba: Research field:Bioinformatics and Data integration (Hiroshi Masuya: Professor, School of Integrative and Global Majors, University of Tsukuba)
https://tlsi.tsukuba.ac.jp/en/people/faculty-members/

Current external funds

Scientific Research B, Grant-in-Aid for Scientific Research (KAKENHI): Development of environmental DNA metabarcoding robust against detection errors
https://kaken.nii.ac.jp/en/grant/KAKENHI-PROJECT-23H02240/
RIKEN Open Life Science Platform: Our aim is to achieve an analysis platform for the open bigdata that enables to predict states of cells and organisms in the data-driven way with the collection and integration of multi-layer and multi-modal data in life science.
https://olsp.riken.jp/en/
Other funds (in Japanese only): https://info.brc.riken.jp/ja/about/collaboration

INtegrated TRAnscriptional REgulation Data platform (INTRARED): https://www.intrared.org
Mammalian Phenotype Ontology (MP) Japanese Translation Project (in DBCLS): https://github.com/dbcls/MP_Japanse/tree/main
Internatioal Mouse Phenotyping Consortium (IMPC): http://www.mousephenotype.org
RIKEN MetaDatabase: http://metadb.riken.jp
National Bioscience Database Center (NBDC): https://biosciencedbc.jp/en/
Asian Mouse Mutagenesis Resource Association (AMMRA): http://ammra.info/
SPARQLthon (Japanese Only): http://wiki.lifesciencedb.jp/mw/SPARQLthon
SPARQL Builder Project / LOD Surfer Project: http://www.sparqlbuilder.org,
https://github.com/dbcls/bh17/wiki/LOD-Surfer
Hozo – Ontology Editor: http://www.hozo.jp

External funds (completed)

MOONSHOT Research & Development Program: Creation of the industry that enables sustainable global food supply by exploiting unused biological resources
Building a platform for sustainable farming by environmental control based on the microbe atlas of the soil
https://www.naro.go.jp/laboratory/brain/moon_shot/202011_nikkei_chibaPD_en.pdf
ROIS-DS-JOINT (2022): Improvement of genome assembly data and genome annotation for disease model mouse strains (Toyoyuki Takada)
ROIS-DS-JOINT (2020-2022): Advancement and utilization of an information infrastructure to promote genomic medicine for rare and intractable diseases (Tatsuya Kushida)
Scientific Research C, Grant-in-Aid for Scientific Research (KAKENHI)(2020-2022): Development of energy landscape based methods to detect early warnings of large compositional shifts in ecological communities (Kenta Suzuki)
https://kaken.nii.ac.jp/en/grant/KAKENHI-PROJECT-20K06820/
Scientific Research B, Grant-in-Aid for Scientific Research (KAKENHI)(2020-2022): Evaluation and prediction of the resilience of biological communities under global environmental change
https://kaken.nii.ac.jp/en/grant/KAKENHI-PROJECT-20H03010/
Exploratory, Grant-in-Aid for Challenging Research (KAKENHI)(2020-2021): Development of high-speed emission for aging factors detecting molecular events in vivo.
https://kaken.nii.ac.jp/en/grant/KAKENHI-PROJECT-20K21851/
NBRP Genome Information Upgrading Program(2020): Long-read sequencing of disease model mouse strains established in Japan (Toyoyuki Takada)
Scientific Research B, Grant-in-Aid for Scientific Research (KAKENHI)“Molecular phylogeny and evoltuionary hisory of the commensal rodents from Myanmar”(2019-2020): https://kaken.nii.ac.jp/en/grant/KAKENHI-PROJECT-17H04604/
Program for an Integrated Database of Clinical and Genomic Information, Japan Agency for Medical Research and Development“PathogenicVariantDatabaseDirectlyApplicabletoClinicalService” (Co-researcher)(2016-2020): https://www.amed.go.jp/en/program/list/04/01/006.html
Brain and Individuality, Scientific Research on innovative Areas (FY2016-2020): Project of Planned Research: “Development of a Phenotype Recording and Mining System for Discovering Individuality” (Co-Project leader)
http://www.koseisouhatsu.jp/en/
Scientific Research B, Grant-in-Aid for Scientific Research (KAKENHI)“Development of reasoning technology for aging studies”(2018-2020): https://kaken.nii.ac.jp/en/grant/KAKENHI-PROJECT-18H03298/
Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)(2018): Project Area: Spectrum of the Sex: a continuity of phenotypes between female and male
Research Project: Roles of Y chromosome genes on the sex spectrum of body balance (Collaborative research)
http://park.itc.u-tokyo.ac.jp/sexspectrum/koubo-project2.html
Grant-in-Aid for Challenging Exploratory Research, Grant-in-Aid for Scientific Research (KAKENHI)(2016-2018): https://kaken.nii.ac.jp/en/grant/KAKENHI-PROJECT-16K14600/
Innovative Food & Healthcare MASTER(2018): https://www.fmi.hokudai.ac.jp/coi_en/